FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001323280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001323280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3076387
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTAATACAGTGAGAAATTTGGACTCTCGGATGAATCAACTGGAGACAA106240.3453401668905765No Hit
GTATTAAGTATCTCGTTCACATTCAGAGCAAGTGACTGGACACTGGTGAC72020.23410578708075416No Hit
GGGTTAGTACAGTGTCATACCAGTGTAGTGTAATGGGGTGTTTCTTGATC58840.19126332285242395No Hit
GTCTTATCTTGTTCCAAGAGTTGCAGGTCGATTTTTCTCACTGAGATCAG48900.1589526935330308No Hit
GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA47330.15384930439505823No Hit
GTGTAGTGTAATGGGGTGTTTCTTGATCAAATTGCACTGCGGATGATTGC42050.1366863141730868No Hit
TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA41940.13632875187679575No Hit
GTTGTAATCATTCCTTCTAAAGTAGCCATCCCTGCTTTAAGTCCAACTAT41600.13522355932462335No Hit
GTGTCATACCAGTGTAGTGTAATGGGGTGTTTCTTGATCAAATTGCACTG41390.13454094039534037No Hit
ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA40610.13200549865800368No Hit
GTACATGGGGAGGCCCGGACGGGTTAGCAACAAGCGACTGCCGGTGCCAA35700.11604521797810223No Hit
CAACTACACTGAGCAAGATTATTAATATTAAACCTAACGATCCAAGACAG35210.11445244047644201No Hit
GTTATATATAATCTGATTTGCGACAGAGAGAATATTATTAAGAAGATCAG34920.11350977624076555No Hit
GTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGATCGCCACAGAAGC33820.10993415327785483No Hit
CTATAAGGGGGTTAAGCTTGCGAAATTTGGAAAAGAAAATCTGATGACAC31780.10330299796482041No Hit
CCCTTATAGGATCCTGATGGTAATGTTTTCCCACTTAGATCAAGCACAGT31480.10232782806584477No Hit
GTACAGTGTCATACCAGTGTAGTGTAATGGGGTGTTTCTTGATCAAATTG31440.10219780541264802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)