FastQCFastQC Report
Wed 31 Aug 2022
EGAF00001324360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001324360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTAATTCTGACTCTTCTGGG12.564102564102564No Hit
GTACCTGGGGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATT12.564102564102564No Hit
GCTTCACTTCCTCATCTAGGAAGTGAAGCTTAACAAAAAGATGGGGATCC12.564102564102564No Hit
GTCTACGTCTATTCCTACTGTAAATATATGGTGTGCTCACACGATAAACC12.564102564102564No Hit
GTGTAGGGCGGTGATACCCAGCTCCTTGCACCTCTGGGCCACATCCTGGG12.564102564102564No Hit
AAGTGTGCATCCAAGAGGCATAGCAGCAGCAGAAGTCTTTAAAGGCTTGT12.564102564102564No Hit
TTATTGGATAGCTTGGAACCACCTGGAGAACCAGGACCTTCCACCAATAT12.564102564102564No Hit
GATAATTTTTGTCCTAAAAATCACTTTAAAGAGAGTGAAAATTTGAGAAA12.564102564102564No Hit
CGGCAACTGGGTTTATGTCTTCATATTTTATATTTTTGTAAATTAAAAAA12.564102564102564No Hit
AAGCTGGCCCTTTCTGGAGGCTCGGGGTCTATATTGACTTCCCAGGAGGG12.564102564102564No Hit
GTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAATAAT12.564102564102564No Hit
GATTATCAGAGACTTTCTACAATGGAATTTGAAATGCAGGGAGCACATTT12.564102564102564No Hit
GAAAAGAGGGGATCTGATGATAAAAAAAGTAGTGTGAAGTCCGGTAGTCG12.564102564102564No Hit
TATCTACTGTGTTTCATGATTTCTGAATGTCATAACATTTGGATTAAATT12.564102564102564No Hit
TATGAAATGAGTTTCTAGTGCATCTTCTTTCTGGATGCTTCTGAGGTTTT12.564102564102564No Hit
CTGTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGA12.564102564102564No Hit
CTATATAAGGTGATAAAACAAATAAACATCTCAAAGAAAGTCAGGAAATG12.564102564102564No Hit
CACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCT12.564102564102564No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12.564102564102564No Hit
TCACCAAGATCTGCTTCTGTGGCGATCACGACGATCTTACACGCTTGCAG12.564102564102564No Hit
ATTCTTCCTTTTTCACCAGAATTCGAATTGGATCTCTCATGAATTTTTTG12.564102564102564No Hit
ATATTTATTGAGTGCAACATGATGCAAAATCTTGAAATGTAGTGGAAAAC12.564102564102564No Hit
TGCATAAGGTATGGAATTAATTTTAAGCCACACACTGAATAGACAGTGAT12.564102564102564No Hit
CCACTGAGCTGCCCTTTGTTACCTTTATGGAAAATGAGTGCTTCACTCCA12.564102564102564No Hit
ATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGC12.564102564102564No Hit
ATATAAATGGGTATGTGATATGTGTGCTATTTGTGTGCTAATGTCCTAAG12.564102564102564No Hit
GTTCATCCACAGAACAGATCCAAAAAATTAATCCAAGAATCGGATCAGCA12.564102564102564No Hit
GGTTTAATTCTGTGACAGAGTTATGTGCAGAGATACCTGAGCAAAAAAAA12.564102564102564No Hit
TGCATATCTTCAATGACGACGGTTGGTTTACCGGGAAAGAGATCCCTGCG12.564102564102564No Hit
CATTACCACCTGAGCTCCAACTCTAGTCAGATCAATGGTGGCATTACATT12.564102564102564No Hit
ACTTTTTTCTTTTTCTTTTTCTTTTTTTTTTGTGACAGGGTCTCACTCTG12.564102564102564No Hit
GTCTTACACCACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGC12.564102564102564No Hit
CGGCGCCGCGATGGACCTCGAGGAGTCGGAAGAGTTTAAAGAACGCTGTA12.564102564102564No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCCCTGCCTCCCC12.564102564102564No Hit
GTTAGGAGTAGTTCTCAATGCGATACCTCTAATTGTCAGCTTAGTTGAGG12.564102564102564No Hit
ATTGATGTACAGTCTGTCATGAACATGTTCCTGAATTCTATTTGCTGGGC12.564102564102564No Hit
AAGTAACTGGGACAAGACTGAAACTTAATCACTAGACACTGTAAAGTCCA12.564102564102564No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG12.564102564102564No Hit
GATTACAAGTGCCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTA12.564102564102564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)