FastQCFastQC Report
Wed 31 Aug 2022
EGAF00001324361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001324361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTCGACGAAGGCGACTAATTTTGCCATTCTCATCCACCTTATAATATT12.564102564102564No Hit
GCGGCATCGCATTGCCCATAATAAATCCGCTACCGACGCTGACTAACATT12.564102564102564No Hit
ACTCTAACCAAAACAACAACAGCAAAACTCTGTCTCAAAAAAAAAAAAAA12.564102564102564No Hit
GTTATATGTTGTCTTTTTTTCCTATGTCTTTTGGCTCAAGCAACATGTAT12.564102564102564No Hit
CTCTACTTTGGCGCGCCTGCGTGAACGCGACATTACCCTCACTTTTGCCA12.564102564102564No Hit
AAGTAAGAGAGGTTGTGCAGGGAAACTCCCTTTTATAAAATCATCAGATC12.564102564102564No Hit
ACTTTGCACAACTCTTACACAAATACTTAGATATTTATTAGATAGCCCTG12.564102564102564No Hit
AAGCGACAGGAAAGGAGCCCGAAGCCACTCTCCCTCCCCACCCTCGGTAG12.564102564102564No Hit
ACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCA12.564102564102564No Hit
GCATAAGATAAGTAAACGTTTGTGTGGCTGGCACAGAGTAGTGCTGTAAA12.564102564102564No Hit
ACCGTAGAGTTTGGAAAGAATTCCTAAAAGACCCAGCATGGGACGAAAGG12.564102564102564No Hit
TCCTAAAACATCTGTGAAGTGTATTTCTGTAGATTAAATTCTGTTTTCCA12.564102564102564No Hit
GATTACAGGTGTGAGCCACCGCACCCGGCTGAAATTTTCTACTCTGTGAT12.564102564102564No Hit
CATGCCTCGGCTCGACGGCACCGATGCGGCGGGGGGAGGGGGGAGGCCCC12.564102564102564No Hit
GATCAGTGTTTGTAACTTCCTGATATCTCTCTGTAACATTGTGGCAAGAA12.564102564102564No Hit
GGGTGTTCCTGAACGATCTTCTGCAGGAGCACTGGGTGGCCCTGAAACCT12.564102564102564No Hit
TCAACGCAGAGTACATGGGGGGTGTGGAGTCTGGAGACGACGTGCAGAAA12.564102564102564No Hit
TCTGTATCCCATTGTCTGGCTTTTGTAAATTCATCCAGGTCAAGACTAAG12.564102564102564No Hit
CCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCAC12.564102564102564No Hit
GGCATATATACTATTAACACATGTTCTGAAATCTGGTAGGTCACATCAGT12.564102564102564No Hit
AGGCCGGAGGAGGGAGGACTGAGGAGGAACAGCCGCCCCCACCCCCCAGA12.564102564102564No Hit
GGTGGTCCGGGTGATTAGAACTGAGCGGTGTATCGGGGGAAGGATTGGTA12.564102564102564No Hit
CATACAACTCTGCATGAAACACCAACAACTGGGAATCACTATCCGAGCAA12.564102564102564No Hit
GAATGTGTTCGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGT12.564102564102564No Hit
GCTCAAGCTCAGTCAGGTACTGGCAAGACAGCCACATTTGCTATTTCCAT12.564102564102564No Hit
GCATATACCTGGGAGTTAAATTGTTAGGTTAAATATGGTATGTGCTTGTT12.564102564102564No Hit
AAAGAAAATAACACAATACTCACTTACCCCAACTCTGTGTAATCTGATTT12.564102564102564No Hit
TTACAGAATACTACTGTGGACATTGGAAACACTGTACACTTAGGCTACAC12.564102564102564No Hit
CTTTTCAGCCACTCTTGAAGGTTCCTGGTCATCCATTCTGGGCACAGTGT12.564102564102564No Hit
GAGGGAAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTTAATTG12.564102564102564No Hit
GGCCAGGCACAGTGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCTGA12.564102564102564No Hit
TGAGAGGACCTTTTAAGAGAGCCTGGATGGATATCAGCATGCAATACAGA12.564102564102564No Hit
GCACAATATTGGCTAAGAGGGAGTGGGTGTTGAGGGTTATGAGAGTAGCT12.564102564102564No Hit
TCTTTGAATGTCTGATAGAATTCAGCTGTGAATCCATCTGGTCCTCGATT12.564102564102564No Hit
GCTTTCCAGTGCTCCACAGATGGCTGCTAGGTGGCTTTTGATAAAATAAA12.564102564102564No Hit
TCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTAT12.564102564102564No Hit
GCCCAGCCTCCGGGCCACCCAGCCTGTGGAGGTTGGTCAGGTGGTCACCC12.564102564102564No Hit
GCTCACACCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCAGATCAT12.564102564102564No Hit
GCTTCAGAGTGTGAAGTCAAATGCATGCCAACATTCCAGTTTTTTAAGAA12.564102564102564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)