FastQCFastQC Report
Wed 31 Aug 2022
EGAF00001324366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001324366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTCCAGGCTCGAGTGCAGTGGCTATTCACAGGCATGATCATAGTGCA13.571428571428571No Hit
ATGTTGGAACGTGCTATGCTGTAGCGTGTCTGGAAACAAAGTACACAAAC13.571428571428571No Hit
TCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCA13.571428571428571No Hit
GTGTCGAACAGGAGCAGCAGCCTTCGGAAAGCCACGAGGGAGGAAGCCCC13.571428571428571No Hit
CCCCCCACCCTCATGACCTCATTGAAACCTAATGACCTTTCAGAGGCCCC13.571428571428571No Hit
TGTGGAAGTCATACTCACAGAAAAGAAAGGCTGGGGCTTGAGAGCTGCCA13.571428571428571No Hit
GTGAATGACGGCGTGGAGGACCTCCGCTGCAAATACGTCTCCCTCATCTA13.571428571428571No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGGGGTC13.571428571428571No Hit
GTACAATGTAGAGGAAAATGGCCGAGACTGTCAAAGTACTGCAACTACTG13.571428571428571No Hit
GTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCAT13.571428571428571No Hit
GGCTCTGGATGCTCAGCACAGAAGGGCTGTGTCAGATATGATTATGGAAC13.571428571428571No Hit
TTACAAAAAAGAATACTTCATTTAAGTGTAATACTGGCTTTATGGACGTA13.571428571428571No Hit
CATCAGGTGTTACACCAGGCTTGATTTCAGGAAATGTCACTGGTTTGTGA13.571428571428571No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13.571428571428571No Hit
GAAGGAAAAAAGTACCAGGAGGACTTTAACCCGCTGGTGAGAGGATGTTC13.571428571428571No Hit
TCACATAAGGCTGTGGCTGCTGCTCCGTTTTCTCAGTGTTCTCTTTCAAA13.571428571428571No Hit
TTCCAGTGATGAGATTGCAGCTCATGAAGGTCTGAGTGAGTTCTTCAGGG13.571428571428571No Hit
TTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGCGCAACGAT13.571428571428571No Hit
AAAAATCACACACTGACAACACAGAAATACGAAATGCTAGGAAAAGTCTA13.571428571428571No Hit
CCTCTGGGACTCAGAAGTGAAAGGGGGCTATTCCTAGTTTTATTGCTATA13.571428571428571No Hit
GAATAAATACTTTACCAAAAAAAGCACACAAATGGCAAATATGCACATGA13.571428571428571No Hit
CTACTGGTCTTTCAACTCCTTCAGTCTTCTGATGGCGGACTTTACCGTGA13.571428571428571No Hit
GGCCAGGCTGGTCTCGAACTCCTGATCTCAGGTGATCCACCCGCCTCAGC13.571428571428571No Hit
TCTATGAAGAATCTCAGACTTAATAATGCCTGCAGCAAAACAAAATAAAA13.571428571428571No Hit
GTATTTGAAGATATATGTTATTTGGGAGAAAATGAAATAGAGCCTTAAGA13.571428571428571No Hit
CAGCCAAGTGGCCCCAAAGAGTGGGGCTGCTGCCTCACGTCCCCACAATG13.571428571428571No Hit
GTCCAGGGCAAAGGTCAGGACTGCCCGGGCCTCCTTTTCTTGCTTGGACG13.571428571428571No Hit
TTATTATCTTCCACATCTCAAAGAGCTCTTTTCCAGTCATTTGAGTAATT13.571428571428571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)