FastQCFastQC Report
Wed 31 Aug 2022
EGAF00001324369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001324369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCTTTCTTTCTCTCTCTCTCTCTTTCTTTCTTTTTTTTTTTTGACGG12.7777777777777777No Hit
CGCCTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTG12.7777777777777777No Hit
ACGCAGGGATCTCTTTCCCGGTAAACCAACCGTCGTCATTGAAGATACGC12.7777777777777777No Hit
GTGTACCACCATGCCCAGCTAATTTTTGTATTTTCAGTGGGGATGGGGCT12.7777777777777777No Hit
GTGCCAGAAAGAGCAGTCACTGACCGGCCGCACTAACCTTCCCTGAGACT12.7777777777777777No Hit
CCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAG12.7777777777777777No Hit
ATCAACGCAGAGTACATCTGCGTTCCTTCTGGACTCTCCAAGTAAACACA12.7777777777777777No Hit
GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA12.7777777777777777No Hit
GGGGCCCCGAAATAGGGGGTACTTGAAGGAAGTGGACAAGACTGGAAATA12.7777777777777777No Hit
GCAGTGCCTGGTGCAACACACGGGCAGCCTGGATGCCACCCGCTGCCATG12.7777777777777777No Hit
TGCCGCGGGGGAAGCGGGGGCAGCCCGGGGGGGGGGGCGGTTGGGACTTG12.7777777777777777No Hit
CTCATGAGCTATCAAAACATTAAGCTTAAAAACAGATGCAATTCCCGGAC12.7777777777777777No Hit
TGTTAGCCCTGGGAGCCATGTGTTACTTATCATTGTACAGATCTTCTTGC12.7777777777777777No Hit
TGACTACACCCTCAAAAGGAAATGCAACAAAATAATACACCAATGGAACT12.7777777777777777No Hit
TGGGGGGGGGGGACGGGGGGGCGGAGGGGGGGGGGCGGGGCGATGCAGGA12.7777777777777777No Hit
CCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGCCCCTTTCTC12.7777777777777777No Hit
GATTTCTGGACTTGGAGGCATTTTCATCTCCTTCACAGAGGTCATCCACT12.7777777777777777No Hit
GTTTTAGGTACTTGTTTGGAAAGTTCTCTGGGTAACATAACATGCCGGTA12.7777777777777777No Hit
GTCTGTGTCTTCAAGCAATCAATAGTCTCCTTATGCCCAACCACAATCTA12.7777777777777777No Hit
CTTTCCCACACACACAGCAGTCAGGTAGATGCCCAAAGGAGGGCAAATCC12.7777777777777777No Hit
GCAGAGTACATGGGACAAAGCCAATTCCATTGTGGTGGATGCACTTTTTA12.7777777777777777No Hit
ATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCA12.7777777777777777No Hit
TCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAAT12.7777777777777777No Hit
CTTAAGACTATAAGGTTATTGTTCCTAAACCATTGCGGTATCTGATACCA12.7777777777777777No Hit
AACTAGAAATTTTAAAAATGAAAAACGGCATTTAAAATATTTAGAAGGCC12.7777777777777777No Hit
CCAAAGGCCGGGCAATCGAGCAACGATAAAACTAGATGTTGGACCAGGAC12.7777777777777777No Hit
CTCATAACTGAATTGCTTAAGTATAATTTATAGAATTTCAGTGCAGTTCA12.7777777777777777No Hit
AGAATAGTCAGTTAAATAGTACAAATTACATTCATGAGGAATGTTAAAAA12.7777777777777777No Hit
GTTGTGGCCATTCACAGTATGGTATTTCTGAATGACAATCTTATCCACGG12.7777777777777777No Hit
GTGGTAAATATGTAGAGGGAGTATAGGGCTGTGACTAGTATGTTGAGTCC12.7777777777777777No Hit
TAGATCCACATGTGTGACCCAGATTCCTTTACACAATCTTTTTCTACTAT12.7777777777777777No Hit
TAATAGGAGGGACCAATTCAAATTCTCACCATTTGTTTCACACCCACAAA12.7777777777777777No Hit
GTCTGAGACTTGCTTGAATTATAGTTGAAGACTGGTTATTGGTCCTACTC12.7777777777777777No Hit
GTAGTAGCAGTGCATGACCTTTTAAGACCACTATGCGAAGGCTATTTAAT12.7777777777777777No Hit
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC12.7777777777777777No Hit
TTTTTATTCTCATGGGTCACTGAGGCTTTTTATTTTGAGCACAAAACCAC12.7777777777777777No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)