FastQCFastQC Report
Thu 23 Mar 2023
EGAF00001336498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001336498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49637325
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTATCTCGTAT2136540.4304301249110422TruSeq Adapter, Index 27 (97% over 44bp)
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG1260500.25394196806536207No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG1042040.20993073256868697No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT700440.14111155264712594No Hit
CCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGA615260.12395107915263363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)