FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001336531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001336531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41369805
Sequences flagged as poor quality0
Sequence length125
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGAC2273340.5495167308620381No Hit
ACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCA1187730.2871007006196911No Hit
ACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACT989740.23924212357297792No Hit
ACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGA981290.2371995710397958No Hit
ACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGT746480.18044078283666068No Hit
AGTCGAAGTGCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATC700540.16933606527756173No Hit
AGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAGG585810.14160327804300746No Hit
AAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGG527070.12740451640997583No Hit
AGCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAG462920.1118980377113211No Hit
ACGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGG435800.10534253182967626No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)