FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001386234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001386234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7069830
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATG77593010.975228541563235TruSeq Adapter, Index 13 (97% over 40bp)
GAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATGCCGTC362710.5130392102780407TruSeq Adapter, Index 13 (97% over 35bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATGC167040.23627159351780735TruSeq Adapter, Index 13 (97% over 39bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)