FastQCFastQC Report
Sat 11 May 2024
EGAF00001393307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001393307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38167062
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTT16059094.207578251634878Clontech SMART CDS Primer II A (100% over 26bp)
TATATATATATATATATATATATATATATATATATATATATAT1136230.29769909981543774No Hit
ATATATATATATATATATATATATATATATATATATATATATA906430.23749011647792015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)