FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001393322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001393322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23093487
Sequences flagged as poor quality0
Sequence length43
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATATATATATATATATATATATATATATATATATATATAT14113966.111662565293843No Hit
ATATATATATATATATATATATATATATATATATATATATATA10678274.623931414082247No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCT949460.4111375644570263TruSeq Adapter, Index 9 (100% over 43bp)
TATATATATATATATATATATATATATATATATATATATATAA283600.12280518745393453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)