FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001411780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001411780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68539871
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC7230041.0548662981872259TruSeq Adapter, Index 12 (100% over 51bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC5472290.7984097314685638TruSeq Adapter, Index 12 (100% over 50bp)
CTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAA1707470.24912069064151No Hit
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAG1264160.18444154935745358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)