FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001416158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22196677
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATT984250.44342222937244163No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT908210.4091648493150574No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT631840.28465522113963276No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG535620.24130639014119096No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGATT367410.1655247765239815No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT343400.15470784207924457No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGATT333320.1501666217875766No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAAT304100.13700248915637236No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG297680.1341101643277505No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAATGGAAT268030.12075230900553267No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATT237150.10684031668343869No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCC234330.10556985624469825TruSeq Adapter, Index 8 (100% over 51bp)
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTTGATTGTAATGGAAT224340.10106918256277729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)