FastQCFastQC Report
Sat 11 May 2024
EGAF00001416159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24336154
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT556460.22865568651480425No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA493150.20264089387337045No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC454430.18673040941473332No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT377050.15493409517378956No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA323760.13303663347955474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)