FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001416168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16392683
Sequences flagged as poor quality0
Sequence length51
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATT340880.207946435613987No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG304890.18599151828898294No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT258210.1575153987910338No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT195670.11936423098037094No Hit
TGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGATT175140.10684035066132859No Hit
TGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATT169600.1034607940628145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)