FastQCFastQC Report
Sat 6 May 2023
EGAF00001416172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24950869
Sequences flagged as poor quality0
Sequence length51
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG507830.20353198920646812No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATT356790.142997023470405No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT278590.11165542971669645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)