FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001416186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20130928
Sequences flagged as poor quality0
Sequence length50
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC772060.38351932906421404TruSeq Adapter, Index 6 (100% over 50bp)
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC476970.2369339356834419No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT326240.16205909633177368No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA271860.13504593528922262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)