FastQCFastQC Report
Sat 1 Apr 2023
EGAF00001416189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32792441
Sequences flagged as poor quality0
Sequence length50
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC556150.16959701170156866No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT447690.1365223162252545No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA382420.11661833896415336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)