FastQCFastQC Report
Fri 31 Mar 2023
EGAF00001416193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24527402
Sequences flagged as poor quality0
Sequence length50
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC384830.1568979869943013No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT319350.1302013152473303No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA258650.10545348422959758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)