FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001416195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27631903
Sequences flagged as poor quality0
Sequence length50
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC363130.1314169349827263TruSeq Adapter, Index 3 (100% over 50bp)
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC316930.11469713106621719No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT314730.11390094992733579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)