FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001416200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22093897
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATT570420.25817989465597674No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT525600.23789374957256296No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG436060.19736672077361453No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT379100.17158584562967774No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGATT338600.1532549916386412No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG267890.12125067841132779No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT233640.10574865991273517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)