FastQCFastQC Report
Fri 10 May 2024
EGAF00001416230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19636320
Total Bases981.8 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAAT350690.17859252650191074No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA287580.14645310322911828No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC264680.1347910402763858No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT228950.11659516650777743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)