FastQCFastQC Report
Fri 31 Mar 2023
EGAF00001416232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001416232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24952452
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATT817750.327723303505403No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAAT720510.2887531854584872No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATT537680.21548182920059317No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG517500.20739444764787043No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGATT346680.13893624562427773No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAAT304700.1221122477261954No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAAT297670.11929488933592577No Hit
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAAG274630.11006132784064668No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGATT267750.10730408378302862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)