FastQCFastQC Report
Thu 23 Feb 2023
EGAF00001418720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001418720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences294071890
Sequences flagged as poor quality0
Sequence length50
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3394290.11542381694489738No Hit
TGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3246620.11040225572053147No Hit
CAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3001810.10207742059263128No Hit
CTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2976880.10122966870447904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)