FastQCFastQC Report
Sun 5 Mar 2023
EGAF00001418731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001418731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295565677
Sequences flagged as poor quality0
Sequence length50
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN200095866.769928837170089No Hit
NNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN15849080.5362287042551291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)