FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001420576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14084
Sequences flagged as poor quality0
Sequence length100
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCCATTAGTCTCAGAAATTGTCTTAAGCAACAGCCCCAA540.3834138028969043No Hit
GTATCAACGCAGAGCACGTTCAGAGGGAAGAGCCATCTCAACAGAATCGC320.2272081794944618No Hit
GTTACATACTGAGTTTATATTTTTATTTGCTTTGAGCAAGGTAGATAAAC290.205907412666856No Hit
CATTTATGTTTTTGTGGTTACATAAATTCCAATGAGTTCACCTAAAGCCC290.205907412666856No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA280.19880715705765406No Hit
CCTCTAGGGTCCTCCTGGGAGAGGGACTGCGGGGCCTTTGGCAGAGCTCT280.19880715705765406No Hit
CCTAAAGCCCTTCCCCACTGGGACATCTCGCTGCTTCCTTGCAAGCTGTT260.1846066458392502No Hit
GGTATCAACGCAGGAGTTACATACTGAGTTTATATTTTTATTTGCTTTGA250.17750639023004827No Hit
GAAAGGAGGAAAATATTTATTCCAAAAGATGGCAGAAAGAAGAAATTCAT230.16330587901164442No Hit
GTATCAACGCAGAGGACATGGGCAGGTACCCAGAGCTGTCACCCTCTCTG220.15620562340244248No Hit
GAGTACATGGGTACCCATTAGTCTCAGAAATTGTCTTAAGCAACAGCCCC220.15620562340244248No Hit
GGTATCAACGCAGAGGACATGGGCAGGTACCCAGAGCTGTCACCCTCTCT200.1420051121840386No Hit
GTCTTAAGCAACAGCCCCAAATGCTGGCTGCCCCCAGCCAAGCATTGGGG200.1420051121840386No Hit
GAACAGGACATCATTTAATTGCCTCTAGGGTCCTCCTGGGAGAGGGACTG180.12780460096563476No Hit
ACATTATAATGGCCAAAATGTTTATCTACCTTGCTCAAAGCAAATAAAAA180.12780460096563476No Hit
GGTATCAACGCAGAGCACGTTCAGAGGGAAGAGCCATCTCAACAGAATCG170.12070434535643283No Hit
ACGCAGAGGACATGGGCAGGTACCCAGAGCTGTCACCCTCTCTGTGTTCT160.1136040897472309No Hit
ACCCAGAGCTGTCACCCTCTCTGTGTTCTCTGAAAGAAACAAATGAACAA160.1136040897472309No Hit
ATAATGGCCAAAATGTTTATCTACCTTGCTCAAAGCAAATAAAAATATAA160.1136040897472309No Hit
GCCTTTGGCAGAGCTCTGGCTGATGGAACCAACAGAGGTGCCCATCAGCC160.1136040897472309No Hit
TCATTTAATTGCCTCTAGGGTCCTCCTGGGAGAGGGACTGCGGGGCCTTT150.10650383413802897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)