FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001420708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525518
Sequences flagged as poor quality0
Sequence length100
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTAAGAATTCCCCGTAGGAATTATCTCCCAGGTCCCCCGCTAGAATT8330.15851026986706448No Hit
GTATAAACAGTAACCATTCCACTTATCACAGCTTGGTTGAGTTTAAAATT6060.11531479416499531No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)