FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001420812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396507
Sequences flagged as poor quality0
Sequence length100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAGTCCCTATTTCCTTTGCTGTGTTCCCCAATGAAGATGGCT6450.1626705203186829No Hit
GTACATGGGAATGAAGAAAGTGAGTTGGATATTTTTAAAGCAGTTAACTA5180.13064082096911278No Hit
GTATATGGAACATGCTTTTTTCAGAAAATTGGCAGTAACTGACTTTGAAG5020.1266055832557811No Hit
GGTTATGACCCTCCCATGAAGCCCTACGGACGGCGCAATGAGATCTGGCT4300.10844701354578859No Hit
GTACATGGAGGTGATGGTGTTTCTTAGAGAGAAGATCACTGAAGAAACTT4270.1076904064745389No Hit
AGTTTATTGTGTTCAGAAAAATCACAGTTTGAGGAAACCTTAAACAATAA4060.1023941569757911No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA4010.10113314519037495No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)