FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001420814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences216837
Sequences flagged as poor quality0
Sequence length100
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14830.6839238690813837No Hit
ATACACATCTGACGCTGCCGACGAAGGCTTAGGTGTAGATCTCGGTGGTC9630.44411239779188977No Hit
AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4850.22367031456808573No Hit
TCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCAC3980.18354801071772808No Hit
GTATCAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAA3550.16371744674571223No Hit
GGTATCAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGA3110.14342570686737044No Hit
GTATAAATCTGTCTGTTTAGAATCTGTGCTGTGTAAGGGCATTCGTACTC3110.14342570686737044No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG3100.14296453096104447No Hit
GTACAGGTAAGATATACTGGAGTCACAGAGCAATATGCATTAACAGGATA2930.13512454055350331No Hit
TTCCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCC2830.1305127814902438No Hit
GTGTAAGGGCATTCGTACTCATGCTGTTACTGTACTTATGCACCATTCAG2760.12728455014596218No Hit
GATGTATGGTGGAAAAAACTGTATCTAACACTGAAACTACTACAGGACTC2750.12682337423963622No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2680.12359514289535457No Hit
GTACAGTAGTTTTTTATCACTAAAAGTTGGACTCATTGATGGAGTCCTGT2630.12128926336372482No Hit
CTTCTATCTTCTCCAAATTGTTTCATCCTACCACTCCCAATTAATCTTTC2530.11667750430046533No Hit
GGATACAACAGTTCATAAAAACTGAGTAACTATGCACACAAATTTCTTAA2500.11529397658148748No Hit
GTCCTGGAGAATATTCCATGTGCTTGAGAGGAAAGTGTATTCTGCTGCTG2360.10883751389292418No Hit
ATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCACTTCAA2330.10745398617394632No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2260.10422575482966467No Hit
GTTTTTATCTTCTAATTTCCCTATCTTCTCTATTCTTTTCTTCGCCTTCC2250.10376457892333872No Hit
CCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAA2200.10145869939170897No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)