FastQCFastQC Report
Wed 8 May 2024
EGAF00001420815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Total Bases400 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT107140.26785No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT82460.20615No Hit
CTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGT74670.18667499999999998No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)