FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001420865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2257276
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT67190.29765965703795194No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59370.2630161309472125No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA33160.14690272700369827No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31360.1389285138370319No Hit
GTCTTAGAGAGTTCCTTCTTGTTCCATGGACTGGACACAATGAAGATTAA24760.10968973222592185No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA24060.10658864932777384No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC22790.10096239892684812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)