FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001420866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2257276
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA33720.14938359332221668No Hit
GTCTTAGAGAGTTCCTTCTTGTTCCATGGACTGGACACAATGAAGATTAA27290.12089793184351405No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA24310.10769617893425526No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC23940.10605703511666273No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC22870.10131680840092218No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC22620.10020927879444075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)