FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001420898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336327
Sequences flagged as poor quality0
Sequence length100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATACACAGCTCAATGGGTCACCTGGAACAAACTTGCTTGACTATATT3790.11268794952531316No Hit
CTATAAACCCTTGACTTGGCAAATAACCGAGCTGTTCTGGTTCAATAGCG3390.10079476224031968No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)