FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001420903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3728313
Sequences flagged as poor quality0
Sequence length100
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT63830.1712034370504837No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT51580.13834675361215648No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT41980.11259784250946742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)