FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001420973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1703003
Sequences flagged as poor quality0
Sequence length100
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT42310.24844348483238138No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41010.2408099104934049No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32780.19248351294742289No Hit
GTATAGACAAGCTTTGTAGTGAAGTATAGTAGCAATAATTTCTGTACCTG26860.15772138980377604No Hit
GTATTAACAAATGGCAATGAGTAGAAAAGTTAACATGAAGATTTTAGAAG21240.12472086073835455No Hit
GTACATGAGAATCCTTTTTTGACAAGCCTTGGAAAGCTGACACTGTCTCT21220.12460342113313952No Hit
AAGTAATACAATGTGCCAATCCATAAAATGTAAGTTAACAGGTTTCTCAA17890.10504972686483818No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)