FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001420974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1703003
Sequences flagged as poor quality0
Sequence length100
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGACAAGCTTTGTAGTGAAGTATAGTAGCAATAATTTCTGTACCTG27630.16224281460455445No Hit
GTATTAACAAATGGCAATGAGTAGAAAAGTTAACATGAAGATTTTAGAAG23780.13963569060066247No Hit
GTACATGAGAATCCTTTTTTGACAAGCCTTGGAAAGCTGACACTGTCTCT23500.13799153612765214No Hit
AAGTAATACAATGTGCCAATCCATAAAATGTAAGTTAACAGGTTTCTCAA18720.10992347048126164No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)