FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001420992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences221900
Sequences flagged as poor quality0
Sequence length100
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTGAACCGCGCACGCCCAGATGCCGAGAAAAAAGAAATGAAAACAAT3370.15187021180712032No Hit
GTTCAGCACCTTGAGGAAGTCAGACGTTTTCGCCCGCATACGTGTGTGAA2960.1333934204596665No Hit
ACTTTATACTGTCCAGCTCTGTTGATTTTAAAGCTTCTTCATCCAGGTCA2660.11987381703470032No Hit
GTCTAAGATTGGTCATACATTCCCAATTTACTCTCAGTTCCAGTCAAGCT2650.11942316358720144No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC2470.11131140153222172No Hit
GCCCCACAGGTCCTCTTTAGCCACAGGGAACCTCCTCTGGAGCTGAAAGA2380.10725552050473185No Hit
ATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGA2280.10274898602974313No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)