FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001421002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1419123
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG19720.13895906133576866No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19670.13860673105854812No Hit
GTCCAGGAGTACGTGTATGACCTGGAACTGAACTGAGCTGCTCAGAGACA18930.1333922429556846No Hit
CTCCTGGACCCAGGACTCACTGGGGTCAGCGCAGACTTGCTTGCCTCTTT18920.1333217769002405No Hit
TCCCTGAAGACTTCCTGTCTCTGAGCAGCTCAGTTCAGTTCCAGGTCATA16520.1164099235936561No Hit
TCTCTGAGCAGCTCAGTTCAGTTCCAGGTCATACACGTACTCCTGGACCC16220.11429594193033303No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)