FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001421038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences237944
Sequences flagged as poor quality0
Sequence length100
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTACATAGCCTAATAACTCAGCAAGGCCTCAACGTCTGTGCTAATTT3080.12944222169922334No Hit
GCTTAAATCTATCTATATTTGAAAAAACGTAGTCACAAGTACCACAAATG2900.12187741653498302No Hit
GTCTTTGTACTGTATTTTTAAAAGCTAGTCATTAAAATCGGTTACTGCCA2580.108428874020778No Hit
CCATAGAGAAGATACATTAAAAAAAATCTTCTGATGTTTTGTAGCCATAA2550.10716807316007128No Hit
CTATATATAAGCTGAGGTAATATGGGCTTGATAAAGCCCATGAGGTAAAT2450.10296540362438221No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)