FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001421068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85879
Sequences flagged as poor quality0
Sequence length100
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3330.3877548644022404No Hit
CATATATGTTGTGTATAAATGTACACTTTTTTAGACATGAAAGAATTGCC1200.139731482667474No Hit
CTATAGGTGTAGTTGTTACTTTGGAATCATGTTTCATCTCCATTTTCACT1090.12692276342295555No Hit
GGGTATAACTGGGTAATACTCAGTTGAGTAATGTAGTTTACTGTGAGTGC1060.12342947635626869No Hit
GTGTTGGCATTTGCACTGGTGATGCTAAAGTAATGGTGGATAAGCTGCTG1050.12226504733403976No Hit
ATCAAATACAGTTCTGAGGGTAAGGTCATGGGGGAGCTCGGACCCAGTGG1050.12226504733403976No Hit
GTACATGGGGTGGCTGATCATAAGAAAGGAGCAAAGAAAGCTAGAATTGA890.10363418297837654No Hit
GATTGATACAGTGTGTAATGATCAAATCAGGTTAATTAGGGTATCCATCA870.10130532493391865No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)