FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001421114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377305
Sequences flagged as poor quality0
Sequence length100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21310.5647950596997124No Hit
AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5740.15213156464928904No Hit
GTCTTATCACATCGCCAATTAGTTGTAATAAACGTTCAACGTACAAACAC5030.13331389724493448No Hit
GTATGGAACCTCGGGGGTGACCTGGGAATAGGAGCGTTGAGAGTTCTGTT4080.10813532818276991No Hit
TATTAATACAAGGGGTTTGAACTGGACATCCTAATGATGCAATTACGTCA3900.10336465193941241No Hit
ACTTAATATATTTGCTTTTTTTCTCACCTGCACTTAGAGGAAATTTGAAC3900.10336465193941241No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)