FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001421128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53216
Sequences flagged as poor quality0
Sequence length100
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC2610.4904539987973542No Hit
GTACATGGGAGAGGGAGCTGTGTTAGTACAACTGAAGGGATCCAACTTGC900.1691220685508118No Hit
GTGTTAGTACAACTGAAGGGATCCAACTTGCAAAAGAACTAGGAGCAACC900.1691220685508118No Hit
GTCTAATTCCATGAAAGGAGTTGCTCATTTTTCTTTTCTTCATTTTTTCA790.14845159350571258No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA610.11462717979555022No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)