FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001421185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3418549
Sequences flagged as poor quality0
Sequence length100
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59740.17475250464451436No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT51310.15009291953983986No Hit
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT38970.11399573327748119No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)