FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001421224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences672845
Sequences flagged as poor quality0
Sequence length100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14830.22040737465538127No Hit
TCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCAC7170.1065624326553664No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)