FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001421240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183856
Sequences flagged as poor quality0
Sequence length100
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8230.4476329301192237No Hit
AATATAGAGATTTTATTTAAACTGTATTGAATTTTTACAGCACATTGCAT2710.1473979636237055No Hit
CATTTGGGGAGACTGTATCTGTCTACTTAGCGTGGCTGTTTTGAGGGACT2300.12509790270646592No Hit
GTATTGAATTTTTACAGCACATTGCATGTTTGTCACAACGCAACTGCACA2150.1169393438343051No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)