FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001421862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10254
Sequences flagged as poor quality0
Sequence length100
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA220.21455041934854693No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT110.10727520967427347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)