FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001421968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106801
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17011.592681716463329No Hit
CATCTGACGCTGCCGACGAAGGCTTAGGTGTAGATCTCGGTGGTCGCCGT2270.21254482635930375Illumina Single End PCR Primer 1 (100% over 23bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1560.14606604807071094No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)