FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001421984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11172
Sequences flagged as poor quality0
Sequence length100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCAGATGTTCAA890.7966344432509845No Hit
TATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATTGT870.7787325456498388No Hit
GTATCAACGCAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCAGAT550.49230218403150733No Hit
GTTTAGCTGTGAACACCACAATCTGCAGATGTTCAAGTCCCTTACATAAA420.37593984962406013No Hit
GGTTACATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGC380.3401360544217687No Hit
TATCAACGCAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCAGATG320.2864303616183316No Hit
GGTATCAACGCAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCAGA290.259577515216613No Hit
ATACAGGAGAATATGCATAGGTTACATATAAATACTATGCCATTTTATGT290.259577515216613No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA200.17901897601145722No Hit
ATGCATAGGTTACATATAAATACTATGCCATTTTATGTAAGGGACTTGAA200.17901897601145722No Hit
GTAGAGATGATTTAAAATATACAGGAGAATATGCATAGGTTACATATAAA190.17006802721088435No Hit
ATATACAGGAGAATATGCATAGGTTACATATAAATACTATGCCATTTTAT190.17006802721088435No Hit
CTGTTTAGCTGTGAACACCACAATCTGCAGATGTTCAAGTCCCTTACATA180.1611170784103115No Hit
GAATATGCATAGGTTACATATAAATACTATGCCATTTTATGTAAGGGACT180.1611170784103115No Hit
GGAGAATATGCATAGGTTACATATAAATACTATGCCATTTTATGTAAGGG160.1432151808091658No Hit
CATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATT150.13426423200859292No Hit
AAAATATACAGGAGAATATGCATAGGTTACATATAAATACTATGCCATTT140.12531328320802004No Hit
ATTTTATGTAAGGGACTTGAACATCTGCAGATTGTGGTGTTCACAGCTAA130.1163623344074472No Hit
GTATTTATATGTAACCTATGCATATTCTCCTGTATATTTTAAATCATCTC120.10741138560687433No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)