FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001421986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16662
Sequences flagged as poor quality0
Sequence length100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGGAGTTGGAATTAGTTGGTCCCTACTGTCCCCCATGAG940.5641579642299844No Hit
TTCCTGCATTTCTCATTTTTATTTGACAGAAAAAGTTGCTCTTGCTGTAC340.20405713599807945No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA320.19205377505701596No Hit
GCATTTCTCATTTTTATTTGACAGAAAAAGTTGCTCTTGCTGTACAGATT310.18605209458648422No Hit
ACGCAGGAGTTGGAATTAGTTGGTCCCTACTGTCCCCCATGAGGTTGTGA280.16804705317488897No Hit
CTACTGTCCCCCATGAGGTTGTGAACCCCTCCCCCCAACTTTTCATGTTT270.16204537270435723No Hit
GTTGTGAACCCCTCCCCCCAACTTTTCATGTTTCTTAAAGGCATTTTGGT260.15604369223382547No Hit
GATTTTAAAAAACCAAAATGCCTTTAAGAAACATGAAAAGTTGGGGGGAG230.13803865082223024No Hit
GTACAGATTTTAAAAAACCAAAATGCCTTTAAGAAACATGAAAAGTTGGG220.13203697035169848No Hit
GTATCAACGCAGGAGTTGGAATTAGTTGGTCCCTACTGTCCCCCATGAGG210.12603528988116672No Hit
GGTCCCTACTGTCCCCCATGAGGTTGTGAACCCCTCCCCCCAACTTTTCA200.12003360941063498No Hit
GCTGTACAGATTTTAAAAAACCAAAATGCCTTTAAGAAACATGAAAAGTT190.11403192894010324No Hit
TCTCATTTTTATTTGACAGAAAAAGTTGCTCTTGCTGTACAGATTTTAAA190.11403192894010324No Hit
CTGCATTTCTCATTTTTATTTGACAGAAAAAGTTGCTCTTGCTGTACAGA180.10803024846957147No Hit
GAAAAAGTTGCTCTTGCTGTACAGATTTTAAAAAACCAAAATGCCTTTAA180.10803024846957147No Hit
CTCTTGCTGTACAGATTTTAAAAAACCAAAATGCCTTTAAGAAACATGAA170.10202856799903973No Hit
TTTTTATTTGACAGAAAAAGTTGCTCTTGCTGTACAGATTTTAAAAAACC170.10202856799903973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)