FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001422022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001422022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207421
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11050.5327329441088414No Hit
CATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGGTCGCCGT4790.2309312943241041Illumina Single End PCR Primer 1 (95% over 24bp)
CTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTG4430.21357528890517352No Hit
ATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGGTC2350.11329614648468575No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)