FastQCFastQC Report
Tue 14 May 2024
EGAF00001427090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001427090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149771313
Total Bases11.2 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTCTTCAACTTGCTGAGCTCACACCATTTGCAAAAGAAGCTTTGTACT3184165821.26018485262261No Hit
CATTGCCAGCTGTTAGGGCCGCAGCAAAGGCGCTGCGCTGCCCCCCTCTG2125705314.193007041341755No Hit
TGATTCACTGATTCCTCACCCATGCACCATTCACCAGGTTTCAGTTCACC98944466.606369271797731No Hit
TGATTCACTGATTCCTCACCCATGGGTTTGTTTCTCATTTTTCCTGAATC83834085.597472461231611No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15710711.0489799204738226No Hit
TGATTCACTGATTCCTAACCCATGCACCATTCACCAGGTTTCAGTTCACC2226210.1486406145080667No Hit
TGATTCACTGATTCCTCTCCCATGCACCATTCACCAGGTTTCAGTTCACC1923610.1284364783528338No Hit
TGATTCACTGATTCCTAACCCATGGGTTTGTTTCTCATTTTTCCTGAATC1671960.11163419526141163No Hit
TGATTCACTGATTCCTCTCCCATGGGTTTGTTTCTCATTTTTCCTGAATC1571230.10490860823260592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)